One last thing I will try before starting my project is to shave a bit of time off of it. Currently, I've got a script I've been using for months now that selects 95x95. I use another script (or actually action up until now) to copy and paste into a new file and save. I think the smarter approach is this:
-Open desired files
-Have script loop through each open document, waiting for mouse input.
-Once the mouse is clicked, set the 95x95 selection from wherever the XY coordinates are
-Copy -> New File -> Paste -> Close -> Close
-Rinse->Repeat.
Problem is, after quite a bit of searching, I've not found anything that hints that Photoshop's implementation of Javascript can get mouse coordinates. In fact, I see that in Javascript they are browser specific, so that's not going to help me.
Am I at a total loss here?